Ensemble functionsΒΆ
- Add kinetic functions to path
- Build ensemble
- Check stability
- Compute Gibbs free energy ranges
- Compute robust fluxes
- Export model to SBML
- Extract prior
- Find issues with TMFA
- Fix variable names
- General Hit-and-Run sampler
- Initial sampler
- Initialize ensemble
- Load ensemble structure
- Pool constraint function
- Sample allostery
- Sample enzyme abundances
- Sample fluxes and Gibbs free energies for each model
- Sample general reversibilities
- Sample modifier elementary fluxes