API documentationΒΆ
Here you can find the API documentation for all functions.
Analysis functions
Ensemble functions
- Ensemble functions
- Add kinetic functions to path
- Build ensemble
- Check stability
- Compute Gibbs free energy ranges
- Compute robust fluxes
- Export model to SBML
- Extract prior
- Find issues with TMFA
- Fix variable names
- General Hit-and-Run sampler
- Initial sampler
- Initialize ensemble
- Load ensemble structure
- Pool constraint function
- Sample allostery
- Sample enzyme abundances
- Sample fluxes and Gibbs free energies for each model
- Sample general reversibilities
- Sample modifier elementary fluxes
Pattern functions
- Pattern functions
- Algebra
- Build allosteric
- Build diffusion
- Build fixed exchange
- Build free exchange
- Build kinetic function
- Build mass action
- Build ODE function
- Build reaction
- Calculate extreme pathways
- Calculate kinetic parameters
- Column vector
- Compute branched reversibilities
- Cycled paths
- Get expression
- Get link
- Get weight
- Reaction pattern
- Read input
Simulations visualization