Calculate kinetic parameters¶
- calculateKineticParams(randomRev, forwardFlux, reactionFlux, randomEnzymes, Nelem, branchFactor, modifierElemFlux, rxnIsPromiscuous)¶
Function used to calculate the kinetic parameters of the reaction.
USAGE:
K = calculateKineticParams(randomRev, forwardFlux, reactionFlux, randomEnzymes, Nelem, branchFactor, modifierElemFlux, rxnIsPromiscuous)
- INPUT:
randomRev (double vector): feasible random reversibilities in the pattern forwardFlux (int matrix): list with the edges of the forward reactions reactionFlux (double vector): overall reaction flux randomEnzymes (double vector): random enzyme complexes abundances Nelem (int matrix): null basis Selem branchFactor (int vector): branching factor ~distributes Dir(1) modifierElemFlux (double vector): elementary flux entries for mechanisms with modifiers rxnIsPromiscuous (logical): boolean specifying whether or not reaction is promiscuous
- OUTPUT:
K (double vector): kinetic parameters for the reaction pattern